Research Groups

 

Publications of Misha Kudryashev (Results: 38)

 

Nuclear Pore Complex Components in the Malaria Parasite Plasmodium berghei.
Scientific reports
Kehrer J, Kuss C, Andres-Pons A, Reustle A, Dahan N, Devos D, Kudryashev M, Beck M, Mair GR, Frischknecht F PubMed
Jul 2018 Volume: 8 Issue: 1 Pages: 11249

Functional insights into pathogen biology from 3D electron microscopy.
FEMS microbiology reviews
Cyrklaff M, Frischknecht F, Kudryashev M PubMed
11 2017 Volume: 41 Issue: 6 Pages: 828-853

Cryo-EM structure of the extended type VI secretion system sheath-tube complex.
Nature microbiology
Wang J, Brackmann M, Castaño-Díez D, Kudryashev M, Goldie KN, Maier T, Stahlberg H, Basler M PubMed
Nov 2017 Volume: 2 Issue: 11 Pages: 1507-1512

Membrane vesicle secretion and prophage induction in multidrug-resistant Stenotrophomonas maltophilia in response to ciprofloxacin stress.
Environmental microbiology
Devos S, Van Putte W, Vitse J, Van Driessche G, Stremersch S, Van Den Broek W, Raemdonck K, Braeckmans K, Stahlberg H, Kudryashev M, Savvides SN, Devreese B PubMed
Oct 2017 Volume: 19 Issue: 10 Pages: 3930-3937

Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms.
Journal of structural biology
Castaño-Díez D, Kudryashev M, Stahlberg H PubMed
02 2017 Volume: 197 Issue: 2 Pages: 135-144

Recent progress in structure and dynamics of dual-membrane-spanning bacterial nanomachines.
Current opinion in structural biology
Gold V, Kudryashev M PubMed
08 2016 Volume: 39 Issue: Pages: 1-7

The Structure of the Mouse Serotonin 5-HT3 Receptor in Lipid Vesicles.
Structure (London, England : 1993)
Kudryashev M, Castaño-Díez D, Deluz C, Hassaine G, Grasso L, Graf-Meyer A, Vogel H, Stahlberg H PubMed
Jan 2016 Volume: 24 Issue: 1 Pages: 165-170

Structure of a bacterial type III secretion system in contact with a host membrane in situ.
Nature communications
Nans A, Kudryashev M, Saibil HR, Hayward RD PubMed
Dec 2015 Volume: 6 Issue: Pages: 10114

Structure of the type VI secretion system contractile sheath.
Cell
Kudryashev M, Wang RY, Brackmann M, Scherer S, Maier T, Baker D, DiMaio F, Stahlberg H, Egelman EH, Basler M PubMed
Feb 2015 Volume: 160 Issue: 5 Pages: 952-962

De novo protein structure determination from near-atomic-resolution cryo-EM maps.
Nature methods
Wang RY, Kudryashev M, Li X, Egelman EH, Basler M, Cheng Y, Baker D, DiMaio F PubMed
Apr 2015 Volume: 12 Issue: 4 Pages: 335-8

Composition, formation, and regulation of the cytosolic c-ring, a dynamic component of the type III secretion injectisome.
PLoS biology
Diepold A, Kudryashev M, Delalez NJ, Berry RM, Armitage JP PubMed
Jan 2015 Volume: 13 Issue: 1 Pages: e1002039

Yersinia enterocolitica type III secretion injectisomes form regularly spaced clusters, which incorporate new machines upon activation.
Molecular microbiology
Kudryashev M, Diepold A, Amstutz M, Armitage JP, Stahlberg H, Cornelis GR PubMed
Mar 2015 Volume: 95 Issue: 5 Pages: 875-84

The ultrastructure of Chlorobaculum tepidum revealed by cryo-electron tomography.
Biochimica et biophysica acta
Kudryashev M, Aktoudianaki A, Dedoglou D, Stahlberg H, Tsiotis G PubMed
Oct 2014 Volume: 1837 Issue: 10 Pages: 1635-42

Clostridium difficile toxin CDT hijacks microtubule organization and reroutes vesicle traffic to increase pathogen adherence.
Proceedings of the National Academy of Sciences of the United States of America
Schwan C, Kruppke AS, Nölke T, Schumacher L, Koch-Nolte F, Kudryashev M, Stahlberg H, Aktories K PubMed
Feb 2014 Volume: 111 Issue: 6 Pages: 2313-8

Structure of the dodecameric Yersinia enterocolitica secretin YscC and its trypsin-resistant core.
Structure (London, England : 1993)
Kowal J, Chami M, Ringler P, Müller SA, Kudryashev M, Castaño-Díez D, Amstutz M, Cornelis GR, Stahlberg H, Engel A PubMed
Dec 2013 Volume: 21 Issue: 12 Pages: 2152-61

Molecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism.
Nature chemical biology
Degiacomi MT, Iacovache I, Pernot L, Chami M, Kudryashev M, Stahlberg H, van der Goot FG, Dal Peraro M PubMed
Oct 2013 Volume: 9 Issue: 10 Pages: 623-9

In situ structural analysis of the Yersinia enterocolitica injectisome.
eLife
Kudryashev M, Stenta M, Schmelz S, Amstutz M, Wiesand U, Castaño-Díez D, Degiacomi MT, Münnich S, Bleck CK, Kowal J, Diepold A, Heinz DW, Dal Peraro M, Cornelis GR, Stahlberg H PubMed
Jul 2013 Volume: 2 Issue: Pages: e00792

Electron tomography of Plasmodium falciparum merozoites reveals core cellular events that underpin erythrocyte invasion.
Cellular microbiology
Hanssen E, Dekiwadia C, Riglar DT, Rug M, Lemgruber L, Cowman AF, Cyrklaff M, Kudryashev M, Frischknecht F, Baum J, Ralph SA PubMed
Sep 2013 Volume: 15 Issue: 9 Pages: 1457-72

Cryo-electron tomography reveals four-membrane architecture of the Plasmodium apicoplast.
Malaria journal
Lemgruber L, Kudryashev M, Dekiwadia C, Riglar DT, Baum J, Stahlberg H, Ralph SA, Frischknecht F PubMed
Jan 2013 Volume: 12 Issue: Pages: 25

Structural basis for chirality and directional motility of Plasmodium sporozoites.
Cellular microbiology
Kudryashev M, Münter S, Lemgruber L, Montagna G, Stahlberg H, Matuschewski K, Meissner M, Cyrklaff M, Frischknecht F PubMed
Nov 2012 Volume: 14 Issue: 11 Pages: 1757-68

Improving the quality of electron tomography image volumes using pre-reconstruction filtering.
Journal of structural biology
Maiorca M, Hanssen E, Kazmierczak E, Maco B, Kudryashev M, Hall R, Quiney H, Tilley L PubMed
Oct 2012 Volume: 180 Issue: 1 Pages: 132-42

Dynamo: a flexible, user-friendly development tool for subtomogram averaging of cryo-EM data in high-performance computing environments.
Journal of structural biology
Castaño-Díez D, Kudryashev M, Arheit M, Stahlberg H PubMed
May 2012 Volume: 178 Issue: 2 Pages: 139-51

Limiting factors in single particle cryo electron tomography.
Computational and structural biotechnology journal
Kudryashev M, Castaño-Díez D, Stahlberg H PubMed
2012 Volume: 1 Issue: Pages: e201207002

Assessing the benefits of focal pair cryo-electron tomography.
Journal of structural biology
Kudryashev M, Stahlberg H, Castaño-Díez D PubMed
May 2012 Volume: 178 Issue: 2 Pages: 88-97

Interaction of complexes I, III, and IV within the bovine respirasome by single particle cryoelectron tomography.
Proceedings of the National Academy of Sciences of the United States of America
Dudkina NV, Kudryashev M, Stahlberg H, Boekema EJ PubMed
Sep 2011 Volume: 108 Issue: 37 Pages: 15196-200

Environmental constraints guide migration of malaria parasites during transmission.
PLoS pathogens
Hellmann JK, Münter S, Kudryashev M, Schulz S, Heiss K, Müller AK, Matuschewski K, Spatz JP, Schwarz US, Frischknecht F PubMed
Jun 2011 Volume: 7 Issue: 6 Pages: e1002080

Evidence of direct cell-cell fusion in Borrelia by cryogenic electron tomography.
Cellular microbiology
Kudryashev M, Cyrklaff M, Alex B, Lemgruber L, Baumeister W, Wallich R, Frischknecht F PubMed
May 2011 Volume: 13 Issue: 5 Pages: 731-41

Key factors regulating Plasmodium berghei sporozoite survival and transformation revealed by an automated visual assay.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology
Hegge S, Kudryashev M, Barniol L, Frischknecht F PubMed
Dec 2010 Volume: 24 Issue: 12 Pages: 5003-12

Geometric constrains for detecting short actin filaments by cryogenic electron tomography.
PMC biophysics
Kudryashev M, Lepper S, Baumeister W, Cyrklaff M, Frischknecht F PubMed
Mar 2010 Volume: 3 Issue: 1 Pages: 6

Plasmodium sporozoite motility is modulated by the turnover of discrete adhesion sites.
Cell host & microbe
Münter S, Sabass B, Selhuber-Unkel C, Kudryashev M, Hegge S, Engel U, Spatz JP, Matuschewski K, Schwarz US, Frischknecht F PubMed
Dec 2009 Volume: 6 Issue: 6 Pages: 551-62

Positioning of large organelles by a membrane- associated cytoskeleton in Plasmodium sporozoites.
Cellular microbiology
Kudryashev M, Lepper S, Stanway R, Bohn S, Baumeister W, Cyrklaff M, Frischknecht F PubMed
Mar 2010 Volume: 12 Issue: 3 Pages: 362-71

Distinct in situ structures of the Borrelia flagellar motor.
Journal of structural biology
Kudryashev M, Cyrklaff M, Wallich R, Baumeister W, Frischknecht F PubMed
Jan 2010 Volume: 169 Issue: 1 Pages: 54-61

Automated classification of Plasmodium sporozoite movement patterns reveals a shift towards productive motility during salivary gland infection.
Biotechnology journal
Hegge S, Kudryashev M, Smith A, Frischknecht F PubMed
Jun 2009 Volume: 4 Issue: 6 Pages: 903-13

Comparative cryo-electron tomography of pathogenic Lyme disease spirochetes.
Molecular microbiology
Kudryashev M, Cyrklaff M, Baumeister W, Simon MM, Wallich R, Frischknecht F PubMed
Mar 2009 Volume: 71 Issue: 6 Pages: 1415-34

Special: biotech in Russia.
Biotechnology journal
Rabinovich M, Burghardt N, Gorzka G, Kudryashev M, Leonov A, Konov A PubMed
Jul 2007 Volume: 2 Issue: 7 Pages: 775-89

Cryoelectron tomography reveals periodic material at the inner side of subpellicular microtubules in apicomplexan parasites.
The Journal of experimental medicine
Cyrklaff M, Kudryashev M, Leis A, Leonard K, Baumeister W, Menard R, Meissner M, Frischknecht F PubMed
Jun 2007 Volume: 204 Issue: 6 Pages: 1281-7

Meeting report: Breaking barriers in microscopy.
Biotechnology journal
Kudryashev M, Münter S PubMed
Jan 2007 Volume: 2 Issue: 1 Pages: 30-2

Luminal particles within cellular microtubules.
The Journal of cell biology
Garvalov BK, Zuber B, Bouchet-Marquis C, Kudryashev M, Gruska M, Beck M, Leis A, Frischknecht F, Bradke F, Baumeister W, Dubochet J, Cyrklaff M PubMed
Sep 2006 Volume: 174 Issue: 6 Pages: 759-65